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Merge branch 'dev' into centrifuge_mqc
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commit
9d2be68fb8
1 changed files with 2 additions and 2 deletions
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@ -127,7 +127,7 @@ workflow PROFILING {
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}
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KRAKEN2_KRAKEN2 ( ch_input_for_kraken2.reads, ch_input_for_kraken2.db, params.kraken2_save_reads, params.kraken2_save_readclassification )
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ch_multiqc_files = ch_multiqc_files.mix( KRAKEN2_KRAKEN2.out.report.dump(tag: "hello") )
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ch_multiqc_files = ch_multiqc_files.mix( KRAKEN2_KRAKEN2.out.report )
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ch_versions = ch_versions.mix( KRAKEN2_KRAKEN2.out.versions.first() )
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ch_raw_classifications = ch_raw_classifications.mix( KRAKEN2_KRAKEN2.out.classified_reads_assignment )
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ch_raw_profiles = ch_raw_profiles.mix( KRAKEN2_KRAKEN2.out.report )
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@ -228,7 +228,7 @@ workflow PROFILING {
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MOTUS_PROFILE ( ch_input_for_motus.reads, ch_input_for_motus.db )
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ch_versions = ch_versions.mix( MOTUS_PROFILE.out.versions.first() )
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ch_raw_profiles = ch_raw_profiles.mix( MOTUS_PROFILE.out.out )
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ch_multiqc_files = ch_multiqc_files.mix( MOTUS_PROFILE.out.log.map{it[1]} )
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ch_multiqc_files = ch_multiqc_files.mix( MOTUS_PROFILE.out.log )
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}
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emit:
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