From 9f634805e402c99bd906c523fdbba3350f4086e4 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Mon, 18 Apr 2022 07:31:44 +0200 Subject: [PATCH] Update subworkflows/local/profiling.nf --- subworkflows/local/profiling.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf index 4e0a3a9..659430f 100644 --- a/subworkflows/local/profiling.nf +++ b/subworkflows/local/profiling.nf @@ -87,7 +87,7 @@ workflow PROFILING { ch_input_for_metaphlan3 = ch_input_for_profiling.metaphlan3 .filter{ - if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id + if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] MetaPhlAn3 currently does not accept FASTA files as input. Skipping MetaPhlAn3 for sample " + it[0].id !it[0].is_fasta } .multiMap {