From 9fa6ecad56a11e85c02b547998445e3311618298 Mon Sep 17 00:00:00 2001 From: JIANHONG OU Date: Fri, 3 Jun 2022 14:50:03 -0400 Subject: [PATCH] debug for database csv file --- .github/workflows/ci.yml | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index c018947..96f507c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -116,7 +116,11 @@ jobs: run: | wget https://raw.githubusercontent.com/motu-tool/mOTUs/master/motus/downloadDB.py python downloadDB.py > download_db_log.txt - echo 'tool,db_name,db_params,db_path\nmotus,db_mOTU,,db_mOTU' > 'database_motus.csv' + echo 'tool,db_name,db_params,db_path' > 'database_motus.csv' + echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv' + cat database_motus.csv + echo $PWD + ls $PWD - name: Run pipeline with test data run: |