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Try to reduce MALT memory
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parent
131b39aa8b
commit
a20b3e3c58
5 changed files with 12 additions and 7 deletions
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@ -51,6 +51,7 @@ params {
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process {
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withName: MALT_RUN {
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maxForks = 1
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ext.args = "-m ${params.malt_mode} -J-Xmx8G"
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}
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withName: MEGAN_RMA2INFO_TSV {
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maxForks = 1
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@ -45,5 +45,6 @@ params {
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process {
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withName: MALT_RUN {
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maxForks = 1
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ext.args = "-m ${params.malt_mode} -J-Xmx8G"
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}
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}
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@ -44,5 +44,6 @@ params {
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process {
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withName: MALT_RUN {
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maxForks = 1
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ext.args = "-m ${params.malt_mode} -J-Xmx8G"
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}
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}
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@ -37,6 +37,7 @@ params {
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process {
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withName: MALT_RUN {
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maxForks = 1
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ext.args = "-m ${params.malt_mode} -J-Xmx8G"
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}
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withName: MEGAN_RMA2INFO {
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maxForks = 1
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@ -12,9 +12,9 @@ class WorkflowMain {
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// TODO nf-core: Add Zenodo DOI for pipeline after first release
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//"* The pipeline\n" +
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//" https://doi.org/10.5281/zenodo.XXXXXXX\n\n" +
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"* The nf-core framework\n" +
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" https://doi.org/10.1038/s41587-020-0439-x\n\n" +
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"* Software dependencies\n" +
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'* The nf-core framework\n' +
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' https://doi.org/10.1038/s41587-020-0439-x\n\n' +
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'* Software dependencies\n' +
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" https://github.com/${workflow.manifest.name}/blob/master/CITATIONS.md"
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}
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@ -53,15 +53,15 @@ class WorkflowMain {
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System.exit(0)
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}
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// Print parameter summary log to screen
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log.info paramsSummaryLog(workflow, params, log)
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// Validate workflow parameters via the JSON schema
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if (params.validate_params) {
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NfcoreSchema.validateParameters(workflow, params, log)
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}
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// Print parameter summary log to screen
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log.info paramsSummaryLog(workflow, params, log)
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// Check that a -profile or Nextflow config has been provided to run the pipeline
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NfcoreTemplate.checkConfigProvided(workflow, log)
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@ -90,4 +90,5 @@ class WorkflowMain {
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}
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return null
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}
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}
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