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Remove the join
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1 changed files with 2 additions and 1 deletions
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@ -45,7 +45,8 @@ process KRAKENUNIQ_PRELOADEDKRAKENUNIQ {
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--preload $ram_chunk_size \\
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--preload $ram_chunk_size \\
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--threads $task.cpus
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--threads $task.cpus
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for fastq in "${fastqs.join('\" \"')}"; do \\
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# for fastq in "${fastqs.join('\" \"')}"; do \\
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for fastq in ${fastqs}; do \\
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PREFIX=\$(echo \$fastq)
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PREFIX=\$(echo \$fastq)
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krakenuniq \\
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krakenuniq \\
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--db $db \\
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--db $db \\
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