diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml index 3ee6141..da22e2b 100644 --- a/assets/multiqc_config.yml +++ b/assets/multiqc_config.yml @@ -15,12 +15,12 @@ custom_logo_url: https://nf-co.re/taxprofiler custom_logo_title: "nf-core/taxprofiler" run_modules: - - fastqc - - adapterRemoval - - fastp - - bowtie2 - - kraken - - malt + - fastqc + - adapterRemoval + - fastp + - bowtie2 + - kraken + - malt #extra_fn_clean_exts: # - '_fastp' @@ -28,25 +28,25 @@ run_modules: # - '.se.settings' top_modules: - - 'fastqc': - name: 'FastQC (pre-Trimming)' - path_filters: - - '*raw_*fastqc.zip' - - 'fastp' - - 'adapterRemoval' - - 'fastqc': - name: 'FastQC (post-Trimming)' - path_filters: - - '*raw_*processed.zip' - - 'kraken': - name: 'Kraken' - path_filters: - - '*.kraken2.report.txt' - - 'kraken': - name: 'Centrifuge' - anchor: 'centrifuge' - target: 'Centrifuge' - doi: '10.1101/gr.210641.116' - info: "Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index." - path_filters: - - '*.centrifuge.txt' + - "fastqc": + name: "FastQC (pre-Trimming)" + path_filters: + - "*raw_*fastqc.zip" + - "fastp" + - "adapterRemoval" + - "fastqc": + name: "FastQC (post-Trimming)" + path_filters: + - "*raw_*processed.zip" + - "kraken": + name: "Kraken" + path_filters: + - "*.kraken2.report.txt" + - "kraken": + name: "Centrifuge" + anchor: "centrifuge" + target: "Centrifuge" + doi: "10.1101/gr.210641.116" + info: "Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index." + path_filters: + - "*.centrifuge.txt"