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optimisation for single-cpu processes

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James Fellows Yates 2023-02-09 13:31:57 +01:00
parent 45ac6fedc2
commit a731669b8e
1 changed files with 6 additions and 1 deletions
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7
conf/base.config
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@ -28,7 +28,7 @@ process {
// See https://www.nextflow.io/docs/latest/config.html#config-process-selectors // See https://www.nextflow.io/docs/latest/config.html#config-process-selectors
withLabel:process_single { withLabel:process_single {
cpus = { check_max( 1 , 'cpus' ) } cpus = { check_max( 1 , 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) } memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) } time = { check_max( 4.h * task.attempt, 'time' ) }
} }
withLabel:process_low { withLabel:process_low {
@ -62,4 +62,9 @@ process {
withName:CUSTOM_DUMPSOFTWAREVERSIONS { withName:CUSTOM_DUMPSOFTWAREVERSIONS {
cache = false cache = false
} }
withName: rma2info {
cpus = { check_max( 1 , 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) }
}
} }