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Triple patch combo!
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parent
f63cec3473
commit
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2 changed files with 5 additions and 3 deletions
3
modules/nf-core/porechop/porechop/main.nf
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3
modules/nf-core/porechop/porechop/main.nf
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@ -23,7 +23,8 @@ process PORECHOP_PORECHOP {
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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## To ensure ID matches rest of pipeline based on meta.id rather than input file name
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ln -s $reads ${prefix}.fastq.gz
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[[ -f ${prefix}.fastq.gz ]] || ln -s $reads ${prefix}.fastq.gz
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porechop \\
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-i ${prefix}.fastq.gz \\
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@ -10,12 +10,13 @@ Changes in module 'nf-core/porechop/porechop'
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tuple val(meta), path("*.log") , emit: log
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path "versions.yml" , emit: versions
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@@ -22,12 +22,16 @@
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@@ -22,12 +22,17 @@
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def args = task.ext.args ?: ''
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def prefix = task.ext.prefix ?: "${meta.id}"
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"""
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+ ## To ensure ID matches rest of pipeline based on meta.id rather than input file name
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+ ln -s $reads ${prefix}.fastq.gz
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+
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+ [[ -f ${prefix}.fastq.gz ]] || ln -s $reads ${prefix}.fastq.gz
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+
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porechop \\
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- -i $reads \\
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