From ab42f6b66272240223ee7807ad08c5b8ac9c7b1c Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Fri, 2 Dec 2022 12:49:00 +0100 Subject: [PATCH] wteak message --- subworkflows/local/profiling.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf index b8eb086..ec15386 100644 --- a/subworkflows/local/profiling.nf +++ b/subworkflows/local/profiling.nf @@ -147,7 +147,7 @@ workflow PROFILING { def ch_kraken2_output = KRAKEN2_KRAKEN2.out.report .filter { meta, report -> - if ( meta['instrument_platform'] == 'OXFORD_NANOPORE' ) log.warn "[nf-core/taxprofiler] Bracken has not been evaluated for long-read data. Skipping Bracken for sample ${meta.id}." + if ( meta['instrument_platform'] == 'OXFORD_NANOPORE' ) log.warn "[nf-core/taxprofiler] Bracken has not been evaluated for Nanopore data. Skipping Bracken for sample ${meta.id}." meta['tool'] == 'bracken' && meta['instrument_platform'] != 'OXFORD_NANOPORE'