diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf index f29a366..313790c 100644 --- a/workflows/taxprofiler.nf +++ b/workflows/taxprofiler.nf @@ -62,6 +62,7 @@ include { SHORTREAD_HOSTREMOVAL } from '../subworkflows/local/shortread_ include { LONGREAD_HOSTREMOVAL } from '../subworkflows/local/longread_hostremoval' include { SHORTREAD_COMPLEXITYFILTERING } from '../subworkflows/local/shortread_complexityfiltering' include { PROFILING } from '../subworkflows/local/profiling' +include { VISUALIZATION_KRONA } from '../subworkflows/local/visualization_krona' /* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -209,6 +210,12 @@ workflow TAXPROFILER { PROFILING ( ch_reads_runmerged, DB_CHECK.out.dbs ) ch_versions = ch_versions.mix( PROFILING.out.versions ) + /* + SUBWORKFLOW: VISUALIZATION_KRONA + */ + VISUALIZATION_KRONA ( PROFILING.out.profiles ) + ch_versions = ch_versions.mix( VISUALIZATION_KRONA.out.versions ) + /* MODULE: MultiQC */