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chore: configure output for metaphlan3
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@ -170,6 +170,15 @@ process {
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]
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}
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withName: METAPHLAN3 {
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publishDir = [
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path: { "${params.outdir}/metaphlan3/${metaphlan_db.simpleName}" },
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mode: params.publish_dir_mode,
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pattern: '*.{biom,txt}'
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]
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ext.prefix = { "${meta.id}-${meta.run_accession}-${metaphlan_db.simpleName}" }
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}
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withName: CUSTOM_DUMPSOFTWAREVERSIONS {
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publishDir = [
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path: { "${params.outdir}/pipeline_info" },
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