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Update workflows/taxprofiler.nf

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Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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Lauri Mesilaakso 2022-05-06 08:20:31 +02:00 committed by GitHub
parent e3e55f57c2
commit b0faeedc60
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workflows/taxprofiler.nf
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@ -25,7 +25,7 @@ if (params.shortread_clipmerge_excludeunmerged && !params.shortread_clipmerge_me
if (params.perform_shortread_hostremoval && !params.hostremoval_reference) { exit 1, "ERROR: [nf-core/taxprofiler] --shortread_hostremoval requested but no --hostremoval_reference FASTA supplied. Check input." }
if (!params.hostremoval_reference && params.hostremoval_reference_index) { exit 1, "ERROR: [nf-core/taxprofiler] --shortread_hostremoval_index provided but no --hostremoval_reference FASTA supplied. Check input." }
if (params.hostremoval_reference ) { ch_reference = file(params.hostremoval_reference) }
if (params.hostremoval_reference ) { ch_reference = file(params.hostremoval_reference) }
if (params.shortread_hostremoval_index ) { ch_shortread_reference_index = file(params.shortread_hostremoval_index ) } else { ch_shortread_reference_index = [] }
if (params.longread_hostremoval_index ) { ch_longread_reference_index = file(params.longread_hostremoval_index ) } else { ch_longread_reference_index = [] }