mirror of
https://github.com/MillironX/taxprofiler.git
synced 2024-11-13 07:13:10 +00:00
Update docs/usage.md [skip ci]
This commit is contained in:
parent
11a8624b39
commit
b4f88a29ce
1 changed files with 1 additions and 1 deletions
|
@ -87,7 +87,7 @@ Databases can be supplied either in the form of a compressed `.tar.gz` archive o
|
|||
|
||||
The pipeline takes the paths and specific classification/profiling parameters of the tool of these databases as input via a four column comma-separated sheet.
|
||||
|
||||
> ⚠️ To allow user freedom, nf-core/taxprofiler does not check for mandatory or the validity of non-file database parameters for correct execution of the tool - excluding options offered via pipeline level parameters! Please validate your database parameters (cross-referencing [parameters](https://nf-co.re/taxprofiler/parameters) before submitting the database sheet!
|
||||
> ⚠️ To allow user freedom, nf-core/taxprofiler does not check for mandatory or the validity of non-file database parameters for correct execution of the tool - excluding options offered via pipeline level parameters! Please validate your database parameters (cross-referencing [parameters](https://nf-co.re/taxprofiler/parameters, and the given tool documentation) before submitting the database sheet! For example, if you don't use the default read length - Bracken will require `-r <read_length>` in the `db_params` column.
|
||||
|
||||
An example database sheet can look as follows, where 5 tools are being used, and `malt` and `kraken2` will be used against two databases each. This is because specifying `bracken` implies first running `kraken2` on the same database.
|
||||
|
||||
|
|
Loading…
Reference in a new issue