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Update subworkflows/local/profiling.nf
Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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1 changed files with 3 additions and 1 deletions
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@ -76,7 +76,9 @@ workflow PROFILING {
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ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
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ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
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.filter{
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.filter{
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if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id
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if (it[0].is_fasta) {
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WorkflowTaxprofiler.logMessage("Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample ${it[0].id}.", log)
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}
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!it[0].is_fasta
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!it[0].is_fasta
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}
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}
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.multiMap {
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.multiMap {
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