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Update subworkflows/local/profiling.nf

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Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
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James A. Fellows Yates 2022-04-20 09:15:45 +02:00 committed by GitHub
parent ecaff371aa
commit b7d0557ee0
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1 changed files with 3 additions and 1 deletions
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subworkflows/local/profiling.nf
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@ -76,7 +76,9 @@ workflow PROFILING {
ch_input_for_centrifuge = ch_input_for_profiling.centrifuge ch_input_for_centrifuge = ch_input_for_profiling.centrifuge
.filter{ .filter{
if (it[0].is_fasta) log.warn "[nf-core/taxprofiler] Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample " + it[0].id if (it[0].is_fasta) {
WorkflowTaxprofiler.logMessage("Centrifuge currently does not accept FASTA files as input. Skipping Centrifuge for sample ${it[0].id}.", log)
}
!it[0].is_fasta !it[0].is_fasta
} }
.multiMap { .multiMap {