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Fix motu versions not being exported if not run

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This commit is contained in:
James Fellows Yates 2022-07-13 12:36:29 +02:00
parent d8c0e9e7fe
commit c22946cfab
1 changed files with 1 additions and 2 deletions
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subworkflows/local/profiling.nf
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@ -227,13 +227,12 @@ workflow PROFILING {
MOTUS_PROFILE ( ch_input_for_motus.reads, ch_input_for_motus.db ) MOTUS_PROFILE ( ch_input_for_motus.reads, ch_input_for_motus.db )
ch_versions = ch_versions.mix( MOTUS_PROFILE.out.versions.first() ) ch_versions = ch_versions.mix( MOTUS_PROFILE.out.versions.first() )
ch_raw_profiles = ch_raw_profiles.mix( MOTUS_PROFILE.out.out ) ch_raw_profiles = ch_raw_profiles.mix( MOTUS_PROFILE.out.out )
} }
emit: emit:
classifications = ch_raw_classifications classifications = ch_raw_classifications
profiles = ch_raw_profiles // channel: [ val(meta), [ reads ] ] - should be text files or biom profiles = ch_raw_profiles // channel: [ val(meta), [ reads ] ] - should be text files or biom
versions = ch_versions // channel: [ versions.yml ] versions = ch_versions // channel: [ versions.yml ]
motu_version = MOTUS_PROFILE.out.versions.first() motu_version = params.run_motus ? MOTUS_PROFILE.out.versions.first() : Channel.empty([])
mqc = ch_multiqc_files mqc = ch_multiqc_files
} }