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Update motus merge module to remove unused channel
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commit
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4 changed files with 2 additions and 6 deletions
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@ -111,7 +111,7 @@
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},
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"motus/merge": {
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"branch": "master",
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"git_sha": "8372df6fb2a7638adacae070860685373be61e1f"
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"git_sha": "54ff289487244bf15543ecfa62bd4df49be72b73"
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},
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"motus/profile": {
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"branch": "master",
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1
modules/nf-core/modules/motus/merge/main.nf
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1
modules/nf-core/modules/motus/merge/main.nf
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@ -13,7 +13,6 @@ process MOTUS_MERGE {
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tuple val(meta), path(input)
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path db // to stop docker saying it can't find it... would have to have the module in upstream steps anyway
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path profile_version_yml, stageAs: 'profile_version.yml'
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val biom_format
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output:
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tuple val(meta), path("*.txt") , optional: true, emit: txt
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3
modules/nf-core/modules/motus/merge/meta.yml
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3
modules/nf-core/modules/motus/merge/meta.yml
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@ -35,9 +35,6 @@ input:
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this itself without having the motus database present and configured with the tool
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so here we take it from what is already reported by the upstream module.
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pattern: "versions.yml"
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- biom_format:
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type: boolean
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description: Whether to save output OTU table in biom format
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output:
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- versions:
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@ -109,7 +109,7 @@ workflow STANDARDISATION_PROFILES {
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[[id:it[0]], it[1]]
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}
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MOTUS_MERGE ( ch_profiles_for_motus, ch_input_databases.motus.map{it[1]}, motu_version, [] )
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MOTUS_MERGE ( ch_profiles_for_motus, ch_input_databases.motus.map{it[1]}, motu_version )
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if ( params.generate_biom_output ) {
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ch_standardised_tables = ch_standardised_tables.mix ( MOTUS_MERGE.out.biom )
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