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Update motus merge module to remove unused channel

This commit is contained in:
James Fellows Yates 2022-09-16 10:25:24 +02:00
parent 4e7857e2ed
commit c5cc21d29e
4 changed files with 2 additions and 6 deletions

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@ -111,7 +111,7 @@
},
"motus/merge": {
"branch": "master",
"git_sha": "8372df6fb2a7638adacae070860685373be61e1f"
"git_sha": "54ff289487244bf15543ecfa62bd4df49be72b73"
},
"motus/profile": {
"branch": "master",

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@ -13,7 +13,6 @@ process MOTUS_MERGE {
tuple val(meta), path(input)
path db // to stop docker saying it can't find it... would have to have the module in upstream steps anyway
path profile_version_yml, stageAs: 'profile_version.yml'
val biom_format
output:
tuple val(meta), path("*.txt") , optional: true, emit: txt

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@ -35,9 +35,6 @@ input:
this itself without having the motus database present and configured with the tool
so here we take it from what is already reported by the upstream module.
pattern: "versions.yml"
- biom_format:
type: boolean
description: Whether to save output OTU table in biom format
output:
- versions:

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@ -109,7 +109,7 @@ workflow STANDARDISATION_PROFILES {
[[id:it[0]], it[1]]
}
MOTUS_MERGE ( ch_profiles_for_motus, ch_input_databases.motus.map{it[1]}, motu_version, [] )
MOTUS_MERGE ( ch_profiles_for_motus, ch_input_databases.motus.map{it[1]}, motu_version )
if ( params.generate_biom_output ) {
ch_standardised_tables = ch_standardised_tables.mix ( MOTUS_MERGE.out.biom )