Update motus merge module to remove unused channel

modules.json

@@ -111,7 +111,7 @@
                 },
                 "motus/merge": {
                     "branch": "master",
-                    "git_sha": "8372df6fb2a7638adacae070860685373be61e1f"
+                    "git_sha": "54ff289487244bf15543ecfa62bd4df49be72b73"
                 },
                 "motus/profile": {
                     "branch": "master",

modules/nf-core/modules/motus/merge/main.nf

@@ -13,7 +13,6 @@ process MOTUS_MERGE {
     tuple val(meta), path(input)
     path db // to stop docker saying it can't find it... would have to have the module in upstream steps anyway
     path profile_version_yml, stageAs: 'profile_version.yml'
-    val biom_format
 
     output:
     tuple val(meta), path("*.txt") , optional: true, emit: txt

modules/nf-core/modules/motus/merge/meta.yml

@@ -35,9 +35,6 @@ input:
         this itself without having the motus database present and configured with the tool
         so here we take it from what is already reported by the upstream module.
       pattern: "versions.yml"
-  - biom_format:
-      type: boolean
-      description: Whether to save output OTU table in biom format
 
 output:
   - versions:

subworkflows/local/standardisation_profiles.nf

@@ -109,7 +109,7 @@ workflow STANDARDISATION_PROFILES {
                                     [[id:it[0]], it[1]]
                                 }
 
-    MOTUS_MERGE ( ch_profiles_for_motus, ch_input_databases.motus.map{it[1]}, motu_version, [] )
+    MOTUS_MERGE ( ch_profiles_for_motus, ch_input_databases.motus.map{it[1]}, motu_version )
 
     if ( params.generate_biom_output ) {
         ch_standardised_tables = ch_standardised_tables.mix ( MOTUS_MERGE.out.biom )