From c5e5696f84ca580a0a8c070f50223375d68d6386 Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Thu, 3 Nov 2022 14:58:03 +0100 Subject: [PATCH] Fix parameter name --- nextflow.config | 2 +- nextflow_schema.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/nextflow.config b/nextflow.config index 262aa2d..ce48db9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -120,7 +120,7 @@ params { //krakenuniq run_krakenuniq = false - krakenuniq_ram_run_size = '16G' + krakenuniq_ram_chunk_size = '16G' krakenuniq_save_reads = false // added directly to module in profiling.nf krakenuniq_save_readclassifications = false // added directly to module in profiling.nf diff --git a/nextflow_schema.json b/nextflow_schema.json index c40a0de..69bd4f0 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -399,7 +399,7 @@ "description": "Turn on saving of KrakenUniq-aligned reads", "help_text": "Save reads that do and do not have a taxonomic classification in your output results directory in FASTQ format.\n\n> Modifies tool parameter(s):\n> - krakenuniq: `--classified-out` and `--unclassified-out`" }, - "krakenuniq_ram_run_size": { + "krakenuniq_ram_chunk_size": { "type": "string", "default": "16G", "description": "Specify how large to chunk database when loading into memory for KrakenUniq",