millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-09-21 04:32:06 +00:00
Code Issues Releases Packages Activity

Update usage.md

Browse source
This commit is contained in:
Sofia Stamouli 2022-09-13 15:56:06 +02:00 committed by GitHub
parent db688575f6
commit c664508240
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 6 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
docs/usage.md
View file

@ -410,3 +410,9 @@ We recommend adding the following line to your environment to limit this (typica
```bash
NXF_OPTS='-Xms1g -Xmx4g'
```
## Troubleshooting and FAQs
### I get a warning during centrifuge_kreport process when running taxprofiler on a minimal dataset.
When a sample has no hits, `centrifuge` classifier exits with exit code `255`. The pipeline does not fail and this is provided as a `WARN`.