From c8e49c56f4f6b26dde209acfd474fc5c4f43caf7 Mon Sep 17 00:00:00 2001
From: ljmesi <37740329+ljmesi@users.noreply.github.com>
Date: Fri, 18 Mar 2022 13:47:44 +0100
Subject: [PATCH] Perform fastqc on nanopore reads before trimming

---
 workflows/taxprofiler.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/taxprofiler.nf b/workflows/taxprofiler.nf
index f740324..c3d3eb6 100644
--- a/workflows/taxprofiler.nf
+++ b/workflows/taxprofiler.nf
@@ -89,7 +89,7 @@ workflow TAXPROFILER {
     // MODULE: Run FastQC
     //
     FASTQC (
-        INPUT_CHECK.out.fastq
+        INPUT_CHECK.out.fastq.concat( INPUT_CHECK.out.nanopore )
     )
     ch_versions = ch_versions.mix(FASTQC.out.versions.first())