From c9b521234bab8db27946181ea114f11bfe3e330d Mon Sep 17 00:00:00 2001 From: sofstam Date: Thu, 16 Feb 2023 16:38:00 +0100 Subject: [PATCH] Prettier for docs --- docs/output.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/output.md b/docs/output.md index 4ffad3f..fb1f728 100644 --- a/docs/output.md +++ b/docs/output.md @@ -33,7 +33,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d - [MALT](#malt) - Sequence alignment and analysis tool designed for processing high-throughput sequencing data, especially in the context of metagenomics - [MetaPhlAn3](#metaphlan3) - Genome-level marker gene based taxonomic classifier - [mOTUs](#motus) - Tool for marker gene-based OTU (mOTU) profiling. -- [TAXPASTA](#taxpasta) - Tool to standardise taxonomic profiles as well as merge profiles across samples for the same classifier/profiler. +- [TAXPASTA](#taxpasta) - Tool to standardise taxonomic profiles as well as merge profiles across samples for the same classifier/profiler. - [MultiQC](#multiqc) - Aggregate report describing results and QC from the whole pipeline - [Pipeline information](#pipeline-information) - Report metrics generated during the workflow execution @@ -445,7 +445,7 @@ The resulting HTML files can be loaded into your web browser for exploration. Ea - `taxpasta` - `.*.{tsv,csv,arrow,parquet,biom}`: A list of taxonomic profiler output files. The standard format is the `tsv`. The first column describes the taxonomy ID and the rest of the columns describe the read counts for each sample. - + The following report files are used for the taxpasta step: