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James A. Fellows Yates 2022-07-15 10:51:41 +02:00 committed by GitHub
parent 13280e2468
commit cc3967a3fd
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2 changed files with 2 additions and 2 deletions
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subworkflows/local/profiling.nf
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@ -233,6 +233,6 @@ workflow PROFILING {
classifications = ch_raw_classifications classifications = ch_raw_classifications
profiles = ch_raw_profiles // channel: [ val(meta), [ reads ] ] - should be text files or biom profiles = ch_raw_profiles // channel: [ val(meta), [ reads ] ] - should be text files or biom
versions = ch_versions // channel: [ versions.yml ] versions = ch_versions // channel: [ versions.yml ]
motu_version = params.run_motus ? MOTUS_PROFILE.out.versions.first() : Channel.empty() motus_version = params.run_motus ? MOTUS_PROFILE.out.versions.first() : Channel.empty()
mqc = ch_multiqc_files mqc = ch_multiqc_files
} }

2
workflows/taxprofiler.nf
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@ -225,7 +225,7 @@ workflow TAXPROFILER {
SUBWORKFLOW: PROFILING STANDARDISATION SUBWORKFLOW: PROFILING STANDARDISATION
*/ */
if ( params.run_profile_standardisation ) { if ( params.run_profile_standardisation ) {
STANDARDISATION_PROFILES ( PROFILING.out.classifications, PROFILING.out.profiles, DB_CHECK.out.dbs, PROFILING.out.motu_version ) STANDARDISATION_PROFILES ( PROFILING.out.classifications, PROFILING.out.profiles, DB_CHECK.out.dbs, PROFILING.out.motus_version )
ch_versions = ch_versions.mix( STANDARDISATION_PROFILES.out.versions ) ch_versions = ch_versions.mix( STANDARDISATION_PROFILES.out.versions )
} }