millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-24 23:29:56 +00:00
Code Issues Releases Packages Activity

Apply suggestions from code review

Browse source
This commit is contained in:
James A. Fellows Yates 2022-07-15 10:51:41 +02:00 committed by GitHub
parent 13280e2468
commit cc3967a3fd
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 2 additions and 2 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
subworkflows/local/profiling.nf
View file

@ -233,6 +233,6 @@ workflow PROFILING {
classifications = ch_raw_classifications
profiles = ch_raw_profiles // channel: [ val(meta), [ reads ] ] - should be text files or biom
versions = ch_versions // channel: [ versions.yml ]
motu_version = params.run_motus ? MOTUS_PROFILE.out.versions.first() : Channel.empty()
motus_version = params.run_motus ? MOTUS_PROFILE.out.versions.first() : Channel.empty()
mqc = ch_multiqc_files
}

2
workflows/taxprofiler.nf
View file

@ -225,7 +225,7 @@ workflow TAXPROFILER {
SUBWORKFLOW: PROFILING STANDARDISATION
*/
if ( params.run_profile_standardisation ) {
STANDARDISATION_PROFILES ( PROFILING.out.classifications, PROFILING.out.profiles, DB_CHECK.out.dbs, PROFILING.out.motu_version )
STANDARDISATION_PROFILES ( PROFILING.out.classifications, PROFILING.out.profiles, DB_CHECK.out.dbs, PROFILING.out.motus_version )
ch_versions = ch_versions.mix( STANDARDISATION_PROFILES.out.versions )
}