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Resource optimisation

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This commit is contained in:
James Fellows Yates 2023-02-09 13:33:39 +01:00
parent cc7d219267
commit ce1118930d
1 changed files with 6 additions and 1 deletions
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7
conf/base.config
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@ -28,7 +28,7 @@ process {
// See https://www.nextflow.io/docs/latest/config.html#config-process-selectors // See https://www.nextflow.io/docs/latest/config.html#config-process-selectors
withLabel:process_single { withLabel:process_single {
cpus = { check_max( 1 , 'cpus' ) } cpus = { check_max( 1 , 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) } memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) } time = { check_max( 4.h * task.attempt, 'time' ) }
} }
withLabel:process_low { withLabel:process_low {
@ -62,4 +62,9 @@ process {
withName:CUSTOM_DUMPSOFTWAREVERSIONS { withName:CUSTOM_DUMPSOFTWAREVERSIONS {
cache = false cache = false
} }
withName: RMA2INFO {
cpus = { check_max( 1 , 'cpus' ) }
memory = { check_max( 6.GB * task.attempt, 'memory' ) }
time = { check_max( 4.h * task.attempt, 'time' ) }
}
} }