diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 3bc0dda..106de1b 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -98,5 +98,7 @@ jobs:
           echo 'motus,db_mOTU,,db_mOTU' >> 'database_motus.csv'
 
       - name: Run pipeline with test data
-        run: |
-          nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv
+        uses: Wandalen/wretry.action@v1.0.11
+        with:
+          command: nextflow run ${GITHUB_WORKSPACE} -profile test_motus,docker --outdir ./results --databases ./database_motus.csv
+          attempt_limit: 3
diff --git a/conf/modules.config b/conf/modules.config
index 43f7ebb..d4a2693 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -274,7 +274,7 @@ process {
         ]
     }
 
-    withName: 'NFCORE_TAXPROFILER:TAXPROFILER:PROFILING:MEGAN_RMA2INFO' {
+    withName: 'MEGAN_RMA2INFO_TSV' {
         ext.args = "-c2c Taxonomy"
         ext.prefix = { "${meta.id}" }
         publishDir = [
@@ -312,7 +312,7 @@ process {
         ]
     }
 
-    withName: 'NFCORE_TAXPROFILER:TAXPROFILER:VISUALIZATION_KRONA:MEGAN_RMA2INFO' {
+    withName: 'MEGAN_RMA2INFO_KRONA' {
         ext.args = { "--read2class Taxonomy" }
         ext.prefix = { "${meta.id}-${meta.db_name}" }
     }
diff --git a/conf/test.config b/conf/test.config
index dac0e81..a39a107 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -51,7 +51,10 @@ process {
     withName: MALT_RUN {
         maxForks = 1
     }
-    withName: MEGAN_RMA2INFO {
+    withName: MEGAN_RMA2INFO_TSV {
+        maxForks = 1
+    }
+    withName: MEGAN_RMA2INFO_KRONA {
         maxForks = 1
     }
 }
diff --git a/subworkflows/local/profiling.nf b/subworkflows/local/profiling.nf
index 61aa394..17c96f1 100644
--- a/subworkflows/local/profiling.nf
+++ b/subworkflows/local/profiling.nf
@@ -2,16 +2,16 @@
 // Run profiling
 //
 
-include { MALT_RUN                    } from '../../modules/nf-core/modules/malt/run/main'
-include { MEGAN_RMA2INFO              } from '../../modules/nf-core/modules/megan/rma2info/main'
-include { KRAKEN2_KRAKEN2             } from '../../modules/nf-core/modules/kraken2/kraken2/main'
-include { CENTRIFUGE_CENTRIFUGE       } from '../../modules/nf-core/modules/centrifuge/centrifuge/main'
-include { CENTRIFUGE_KREPORT          } from '../../modules/nf-core/modules/centrifuge/kreport/main'
-include { METAPHLAN3                  } from '../../modules/nf-core/modules/metaphlan3/main'
-include { KAIJU_KAIJU                 } from '../../modules/nf-core/modules/kaiju/kaiju/main'
-include { KAIJU_KAIJU2TABLE           } from '../../modules/nf-core/modules/kaiju/kaiju2table/main'
-include { DIAMOND_BLASTX              } from '../../modules/nf-core/modules/diamond/blastx/main'
-include { MOTUS_PROFILE               } from '../../modules/nf-core/modules/motus/profile/main'
+include { MALT_RUN                              } from '../../modules/nf-core/modules/malt/run/main'
+include { MEGAN_RMA2INFO as MEGAN_RMA2INFO_TSV  } from '../../modules/nf-core/modules/megan/rma2info/main'
+include { KRAKEN2_KRAKEN2                       } from '../../modules/nf-core/modules/kraken2/kraken2/main'
+include { CENTRIFUGE_CENTRIFUGE                 } from '../../modules/nf-core/modules/centrifuge/centrifuge/main'
+include { CENTRIFUGE_KREPORT                    } from '../../modules/nf-core/modules/centrifuge/kreport/main'
+include { METAPHLAN3                            } from '../../modules/nf-core/modules/metaphlan3/main'
+include { KAIJU_KAIJU                           } from '../../modules/nf-core/modules/kaiju/kaiju/main'
+include { KAIJU_KAIJU2TABLE                     } from '../../modules/nf-core/modules/kaiju/kaiju2table/main'
+include { DIAMOND_BLASTX                        } from '../../modules/nf-core/modules/diamond/blastx/main'
+include { MOTUS_PROFILE                         } from '../../modules/nf-core/modules/motus/profile/main'
 
 workflow PROFILING {
     take:
@@ -109,11 +109,11 @@ workflow PROFILING {
                                         [ meta_new, rma ]
                                 }
 
-        MEGAN_RMA2INFO (ch_maltrun_for_megan, params.malt_generate_megansummary )
+        MEGAN_RMA2INFO_TSV (ch_maltrun_for_megan, params.malt_generate_megansummary )
         ch_multiqc_files       = ch_multiqc_files.mix( MALT_RUN.out.log )
-        ch_versions            = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO.out.versions.first() )
+        ch_versions            = ch_versions.mix( MALT_RUN.out.versions.first(), MEGAN_RMA2INFO_TSV.out.versions.first() )
         ch_raw_classifications = ch_raw_classifications.mix( ch_maltrun_for_megan )
-        ch_raw_profiles        = ch_raw_profiles.mix( MEGAN_RMA2INFO.out.txt )
+        ch_raw_profiles        = ch_raw_profiles.mix( MEGAN_RMA2INFO_TSV.out.txt )
 
     }
 
diff --git a/subworkflows/local/visualization_krona.nf b/subworkflows/local/visualization_krona.nf
index 397251f..f06768a 100644
--- a/subworkflows/local/visualization_krona.nf
+++ b/subworkflows/local/visualization_krona.nf
@@ -2,7 +2,7 @@
 // Create Krona visualizations
 //
 
-include { MEGAN_RMA2INFO            } from '../../modules/nf-core/modules/megan/rma2info/main'
+include { MEGAN_RMA2INFO as MEGAN_RMA2INFO_KRONA      } from '../../modules/nf-core/modules/megan/rma2info/main'
 include { KAIJU_KAIJU2KRONA         } from '../../modules/nf-core/modules/kaiju/kaiju2krona/main'
 include { KRAKENTOOLS_KREPORT2KRONA } from '../../modules/nf-core/modules/krakentools/kreport2krona/main'
 include { KRONA_CLEANUP             } from '../../modules/local/krona_cleanup'
@@ -87,15 +87,15 @@ workflow VISUALIZATION_KRONA {
         Convert MALT/MEGAN RMA2INFO files into html Krona visualisations
     */
     if ( params.krona_taxonomy_directory ) {
-        MEGAN_RMA2INFO ( ch_input_classifications.malt, false )
-        GUNZIP ( MEGAN_RMA2INFO.out.txt )
+        MEGAN_RMA2INFO_KRONA ( ch_input_classifications.malt, false )
+        GUNZIP ( MEGAN_RMA2INFO_KRONA.out.txt )
         ch_krona_taxonomy_for_input = GUNZIP.out.gunzip
             .map{[[id: it[0]['db_name'], tool: it[0]['tool']], it[1]]}
             .groupTuple()
 
         KRONA_KTIMPORTTAXONOMY ( ch_krona_taxonomy_for_input, file(params.krona_taxonomy_directory, checkExists: true) )
         ch_krona_html.mix( KRONA_KTIMPORTTAXONOMY.out.html )
-        ch_versions = ch_versions.mix( MEGAN_RMA2INFO.out.versions.first() )
+        ch_versions = ch_versions.mix( MEGAN_RMA2INFO_KRONA.out.versions.first() )
         ch_versions = ch_versions.mix( KRONA_KTIMPORTTAXONOMY.out.versions.first() )
     }