From d3572e18787eee40ed4e856bd6caf2f573246094 Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Sun, 3 Apr 2022 07:28:01 +0200 Subject: [PATCH] Final MQC fix for AR2 (remove too-early collect) --- subworkflows/local/shortread_adapterremoval.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/subworkflows/local/shortread_adapterremoval.nf b/subworkflows/local/shortread_adapterremoval.nf index b173e4c..bbb108e 100644 --- a/subworkflows/local/shortread_adapterremoval.nf +++ b/subworkflows/local/shortread_adapterremoval.nf @@ -77,7 +77,7 @@ workflow SHORTREAD_ADAPTERREMOVAL { ch_versions = ch_versions.mix( ADAPTERREMOVAL_SINGLE.out.versions.first() ) ch_versions = ch_versions.mix( ADAPTERREMOVAL_PAIRED.out.versions.first() ) - ch_multiqc_files = ch_multiqc_files.mix( ADAPTERREMOVAL_PAIRED.out.log.collect{it[1]}, ADAPTERREMOVAL_SINGLE.out.log.collect{it[1]} ) + ch_multiqc_files = ch_multiqc_files.mix( ADAPTERREMOVAL_PAIRED.out.log, ADAPTERREMOVAL_SINGLE.out.log ) emit: reads = ch_processed_reads // channel: [ val(meta), [ reads ] ]