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Allow databases of all tools to arrive as tar.gz

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James A. Fellows Yates 2023-01-24 10:45:01 +01:00 committed by GitHub
parent 1c820f21b3
commit d56e3133f9
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subworkflows/local/db_check.nf
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@ -41,7 +41,7 @@ workflow DB_CHECK {
//Filter the channel to run untar on DBs of tools actually using
ch_input_untar = ch_dbs_for_untar.untar.dump()
.filter { params.run_kraken2 && it[0]['tool'] == 'kraken2' || params.run_centrifuge && it[0]['tool'] == 'centrifuge' || params.run_bracken && it[0]['tool'] == 'bracken' || params.run_kaiju && it[0]['tool'] == 'kaiju' || params.run_krakenuniq && it [0]['tool'] == 'krakenuniq' || params.run_malt && it[0]['tool'] == 'malt' || params.run_metaphlan3 && it[0]['tool'] == 'metaphlan3' }
.filter { params.run_bracken && it[0]['tool'] == 'bracken' || params.run_centrifuge && it[0]['tool'] == 'centrifuge' || || params.run_diamond && it[0]['tool'] == 'diamond' || params.run_kaiju && it[0]['tool'] == 'kaiju' || params.run_kraken2 && it[0]['tool'] == 'kraken2' || params.run_krakenuniq && it [0]['tool'] == 'krakenuniq' || params.run_malt && it[0]['tool'] == 'malt' || params.run_metaphlan3 && it[0]['tool'] == 'metaphlan3' || params.run_motus && it[0]['tool'] == 'motus' }
UNTAR (ch_input_untar)
ch_versions = ch_versions.mix(UNTAR.out.versions.first())
ch_final_dbs = ch_dbs_for_untar.skip.mix( UNTAR.out.untar )