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Fix mOTUs CI and old param warn

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This commit is contained in:
James A. Fellows Yates 2022-09-04 15:01:58 +00:00
parent d093de1bd0
commit dd194f3f47
2 changed files with 2 additions and 5 deletions
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3
.github/workflows/ci.yml vendored
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@ -64,9 +64,6 @@ jobs:
name: Test mOTUs with workflow parameters name: Test mOTUs with workflow parameters
if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }} if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }}
runs-on: ubuntu-latest runs-on: ubuntu-latest
env:
NXF_VER: ${{ matrix.nxf_ver }}
NXF_ANSI_LOG: false
strategy: strategy:
matrix: matrix:
NXF_VER: NXF_VER:

4
conf/test_motus.config
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@ -24,8 +24,8 @@ params {
// TODO nf-core: Give any required params for the test so that command line flags are not needed // TODO nf-core: Give any required params for the test so that command line flags are not needed
input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv' input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
databases = 'database_motus.csv' databases = 'database_motus.csv'
perform_shortread_clipmerge = false perform_shortread_qc = false
perform_longread_clip = false perform_longread_qc = false
perform_shortread_complexityfilter = false perform_shortread_complexityfilter = false
perform_shortread_hostremoval = false perform_shortread_hostremoval = false
perform_longread_hostremoval = false perform_longread_hostremoval = false