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Fix mOTUs CI and old param warn
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parent
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2 changed files with 2 additions and 5 deletions
3
.github/workflows/ci.yml
vendored
3
.github/workflows/ci.yml
vendored
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@ -64,9 +64,6 @@ jobs:
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name: Test mOTUs with workflow parameters
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name: Test mOTUs with workflow parameters
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if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }}
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if: ${{ github.event_name != 'push' || (github.event_name == 'push' && github.repository == 'nf-core/taxprofiler') }}
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runs-on: ubuntu-latest
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runs-on: ubuntu-latest
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env:
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NXF_VER: ${{ matrix.nxf_ver }}
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NXF_ANSI_LOG: false
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strategy:
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strategy:
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matrix:
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matrix:
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NXF_VER:
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NXF_VER:
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@ -24,8 +24,8 @@ params {
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// TODO nf-core: Give any required params for the test so that command line flags are not needed
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// TODO nf-core: Give any required params for the test so that command line flags are not needed
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input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
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input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
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databases = 'database_motus.csv'
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databases = 'database_motus.csv'
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perform_shortread_clipmerge = false
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perform_shortread_qc = false
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perform_longread_clip = false
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perform_longread_qc = false
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perform_shortread_complexityfilter = false
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perform_shortread_complexityfilter = false
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perform_shortread_hostremoval = false
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perform_shortread_hostremoval = false
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perform_longread_hostremoval = false
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perform_longread_hostremoval = false
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