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refactor: make mappings explicit
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1 changed files with 4 additions and 7 deletions
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@ -271,17 +271,14 @@ workflow PROFILING {
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ch_input_for_krakenuniq = ch_input_for_profiling.krakenuniq
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.map {
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meta, reads, db_meta, db ->
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def meta_new = [:]
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meta_new['single_end'] = meta['single_end']
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[meta_new, reads, db_meta, db]
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[[single_end: meta.single_end], reads, db_meta, db]
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}
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.groupTuple(by: [0,2,3])
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.dump(tag: "krakenuniq_premultimap")
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.multiMap {
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it ->
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reads: [ it[0] + it[2], it[1] ]
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db: it[3]
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single_meta, reads, db_meta, db ->
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reads: [ single_meta + db_meta, reads.flatten() ]
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db: db
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}
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// Hardcode to _always_ produce the report file (which is our basic otput, and goes into)
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KRAKENUNIQ_PRELOADEDKRAKENUNIQ ( ch_input_for_krakenuniq.reads.dump(tag: "krakenuniq_input"), ch_input_for_krakenuniq.db.dump(tag: "krakenuniq_db"), params.krakenuniq_ram_chunk_size, params.krakenuniq_save_reads, true, params.krakenuniq_save_readclassifications )
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