From dfb2e02eb3ca165a358b08d3c5a386d6b33babff Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Tue, 2 May 2023 14:06:00 +0200 Subject: [PATCH] Update gunzip --- modules.json | 2 +- modules/nf-core/gunzip/main.nf | 2 +- modules/nf-core/gunzip/meta.yml | 35 +++++++++++++++++---------------- 3 files changed, 20 insertions(+), 19 deletions(-) diff --git a/modules.json b/modules.json index 732388a..498e5eb 100644 --- a/modules.json +++ b/modules.json @@ -83,7 +83,7 @@ }, "gunzip": { "branch": "master", - "git_sha": "c8e35eb2055c099720a75538d1b8adb3fb5a464c", + "git_sha": "b9829e1064382745d8dff7f1d74d2138d2864f71", "installed_by": ["modules"] }, "kaiju/kaiju": { diff --git a/modules/nf-core/gunzip/main.nf b/modules/nf-core/gunzip/main.nf index d906034..194dfc3 100644 --- a/modules/nf-core/gunzip/main.nf +++ b/modules/nf-core/gunzip/main.nf @@ -5,7 +5,7 @@ process GUNZIP { conda "conda-forge::sed=4.7" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val(meta), path(archive) diff --git a/modules/nf-core/gunzip/meta.yml b/modules/nf-core/gunzip/meta.yml index 4d2ebc8..4cdcdf4 100644 --- a/modules/nf-core/gunzip/meta.yml +++ b/modules/nf-core/gunzip/meta.yml @@ -3,31 +3,32 @@ description: Compresses and decompresses files. keywords: - gunzip - compression + - decompression tools: - gunzip: - description: | - gzip is a file format and a software application used for file compression and decompression. - documentation: https://www.gnu.org/software/gzip/manual/gzip.html - licence: ["GPL-3.0-or-later"] + description: | + gzip is a file format and a software application used for file compression and decompression. + documentation: https://www.gnu.org/software/gzip/manual/gzip.html + licence: ["GPL-3.0-or-later"] input: - meta: - type: map - description: | - Optional groovy Map containing meta information - e.g. [ id:'test', single_end:false ] + type: map + description: | + Optional groovy Map containing meta information + e.g. [ id:'test', single_end:false ] - archive: - type: file - description: File to be compressed/uncompressed - pattern: "*.*" + type: file + description: File to be compressed/uncompressed + pattern: "*.*" output: - gunzip: - type: file - description: Compressed/uncompressed file - pattern: "*.*" + type: file + description: Compressed/uncompressed file + pattern: "*.*" - versions: - type: file - description: File containing software versions - pattern: "versions.yml" + type: file + description: File containing software versions + pattern: "versions.yml" authors: - "@joseespinosa" - "@drpatelh"