mirror of
https://github.com/MillironX/taxprofiler.git
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James A. Fellows Yates
GitHub
commit
dfcaaae1fb
10 changed files with 8282 additions and 1 deletions
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#  
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#  
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[](https://github.com/nf-core/taxprofiler/actions?query=workflow%3A%22nf-core+CI%22)
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[](https://github.com/nf-core/taxprofiler/actions?query=workflow%3A%22nf-core+linting%22)
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@ -9,3 +9,7 @@ report_section_order:
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After Width: | Height: | Size: 22 KiB |
BIN
docs/images/nf-core-taxprofiler_logo_custom_dark.png
Normal file
BIN
docs/images/nf-core-taxprofiler_logo_custom_dark.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 389 KiB |
2302
docs/images/nf-core-taxprofiler_logo_custom_dark.svg
Normal file
2302
docs/images/nf-core-taxprofiler_logo_custom_dark.svg
Normal file
File diff suppressed because it is too large
Load diff
|
After Width: | Height: | Size: 87 KiB |
BIN
docs/images/nf-core-taxprofiler_logo_custom_light.png
Normal file
BIN
docs/images/nf-core-taxprofiler_logo_custom_light.png
Normal file
Binary file not shown.
|
After Width: | Height: | Size: 433 KiB |
2305
docs/images/nf-core-taxprofiler_logo_custom_light.svg
Normal file
2305
docs/images/nf-core-taxprofiler_logo_custom_light.svg
Normal file
File diff suppressed because it is too large
Load diff
|
After Width: | Height: | Size: 87 KiB |
3223
docs/images/taxprofiler_logo.svg
Normal file
3223
docs/images/taxprofiler_logo.svg
Normal file
File diff suppressed because it is too large
Load diff
|
After Width: | Height: | Size: 124 KiB |
|
|
@ -87,6 +87,7 @@ def multiqc_report = []
|
|||
workflow TAXPROFILER {
|
||||
|
||||
ch_versions = Channel.empty()
|
||||
ch_taxprofiler_logo = Channel.fromPath("$projectDir/docs/images/nf-core-taxprofiler_logo_custom_light.png")
|
||||
|
||||
/*
|
||||
SUBWORKFLOW: Read in samplesheet, validate and stage input files
|
||||
|
|
@ -224,6 +225,8 @@ workflow TAXPROFILER {
|
|||
ch_multiqc_files = ch_multiqc_files.mix(CUSTOM_DUMPSOFTWAREVERSIONS.out.mqc_yml.collect())
|
||||
ch_multiqc_files = ch_multiqc_files.mix(FASTQC.out.zip.collect{it[1]}.ifEmpty([]))
|
||||
|
||||
ch_multiqc_files = ch_multiqc_files.mix(ch_taxprofiler_logo.ifEmpty([]))
|
||||
|
||||
if (params.perform_shortread_clipmerge) {
|
||||
ch_multiqc_files = ch_multiqc_files.mix( SHORTREAD_PREPROCESSING.out.mqc.collect{it[1]}.ifEmpty([]) )
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in a new issue