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2 changed files with 3 additions and 14 deletions
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@ -23,7 +23,6 @@ params {
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// TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
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// TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
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// TODO nf-core: Give any required params for the test so that command line flags are not needed
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// TODO nf-core: Give any required params for the test so that command line flags are not needed
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input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
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input = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/samplesheet.csv'
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outdir = "./results"
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databases = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/database.csv'
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databases = 'https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/database.csv'
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run_kraken2 = true
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run_kraken2 = true
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run_malt = true
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run_malt = true
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@ -10,10 +10,7 @@
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"type": "object",
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"type": "object",
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"fa_icon": "fas fa-terminal",
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"fa_icon": "fas fa-terminal",
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"description": "Define where the pipeline should find input data and save output data.",
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"description": "Define where the pipeline should find input data and save output data.",
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"required": [
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"required": ["input", "outdir"],
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"input",
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"outdir"
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],
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"properties": {
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"properties": {
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"input": {
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"input": {
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"type": "string",
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"type": "string",
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@ -176,14 +173,7 @@
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"description": "Method used to save pipeline results to output directory.",
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"description": "Method used to save pipeline results to output directory.",
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"help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
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"help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
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"fa_icon": "fas fa-copy",
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"fa_icon": "fas fa-copy",
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"enum": [
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"enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
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"symlink",
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"rellink",
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"link",
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"copy",
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"copyNoFollow",
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"move"
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],
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"hidden": true
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"hidden": true
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},
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},
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"email_on_fail": {
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"email_on_fail": {
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@ -315,4 +305,4 @@
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"default": 15
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"default": 15
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}
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}
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}
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}
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}
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}
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