diff --git a/conf/modules.config b/conf/modules.config index ee1a3d2..78d8153 100644 --- a/conf/modules.config +++ b/conf/modules.config @@ -250,12 +250,12 @@ process { ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" } } - withName: SAMTOOLS_BAM2FQ { + withName: SAMTOOLS_FASTQ { ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" } publishDir = [ - path: { "${params.outdir}/samtools/bam2fq" }, + path: { "${params.outdir}/samtools/fastq" }, mode: params.publish_dir_mode, - pattern: '*.fq.gz', + pattern: '*.fastq.gz', enabled: params.save_hostremoval_unmapped ] }