From e274823f735537b91780f05bf1bd64a69e0092ab Mon Sep 17 00:00:00 2001
From: sofstam <sofia.stamouli@scilifelab.se>
Date: Mon, 27 Mar 2023 12:42:28 +0200
Subject: [PATCH] Add conf for samtools/fastq

---
 conf/modules.config | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/conf/modules.config b/conf/modules.config
index ee1a3d2..78d8153 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -250,12 +250,12 @@ process {
         ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" }
     }
 
-    withName: SAMTOOLS_BAM2FQ {
+    withName: SAMTOOLS_FASTQ {
         ext.prefix = { "${meta.id}_${meta.run_accession}.unmapped" }
         publishDir = [
-            path: { "${params.outdir}/samtools/bam2fq" },
+            path: { "${params.outdir}/samtools/fastq" },
             mode: params.publish_dir_mode,
-            pattern: '*.fq.gz',
+            pattern: '*.fastq.gz',
             enabled: params.save_hostremoval_unmapped
         ]
     }