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fix: remove def

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No idea why, must have something to do with scope.
This commit is contained in:
Moritz E. Beber 2022-10-27 11:50:47 +02:00
parent dd1a4ff158
commit e658fab430
1 changed files with 2 additions and 2 deletions
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4
subworkflows/local/profiling.nf
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@ -151,12 +151,12 @@ workflow PROFILING {
} }
// Extract the database name to combine by. // Extract the database name to combine by.
def ch_bracken_databases = databases ch_bracken_databases = databases
.filter { meta, db -> meta['tool'] == 'bracken' } .filter { meta, db -> meta['tool'] == 'bracken' }
.map { meta, db -> [meta['db_name'], meta, db] } .map { meta, db -> [meta['db_name'], meta, db] }
// Extract the database name to combine by. // Extract the database name to combine by.
def ch_input_for_bracken = ch_kraken2_output ch_input_for_bracken = ch_kraken2_output
.map { meta, report -> [meta['db_name'], meta, report] } .map { meta, report -> [meta['db_name'], meta, report] }
.combine(ch_bracken_databases, by: 0) .combine(ch_bracken_databases, by: 0)
.multiMap { key, meta, report, db_meta, db -> .multiMap { key, meta, report, db_meta, db ->