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Prettier and suggestions from review
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2 changed files with 1 additions and 2 deletions
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@ -256,7 +256,7 @@ process {
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withName: CENTRIFUGE_KREPORT {
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ext.args = { "${meta.db_params}" }
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ext.prefix = { "${meta.id}" }
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ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }
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publishDir = [
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path: { "${params.outdir}/centrifuge/${meta.db_name}" },
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mode: params.publish_dir_mode,
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@ -98,7 +98,6 @@ params {
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// centrifuge
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run_centrifuge = false
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centrifuge_kreport = false
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centrifuge_save_unaligned = false
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centrifuge_save_aligned = false
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centrifuge_sam_format = false
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