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Code Issues Releases Packages Activity

Prettier and suggestions from review

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Sofia Stamouli 2022-04-25 09:21:29 +02:00
parent c00ca1c2b8
commit e7e24c2d95
2 changed files with 1 additions and 2 deletions
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2
conf/modules.config
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@ -256,7 +256,7 @@ process {
withName: CENTRIFUGE_KREPORT { withName: CENTRIFUGE_KREPORT {
ext.args = { "${meta.db_params}" } ext.args = { "${meta.db_params}" }
ext.prefix = { "${meta.id}" } ext.prefix = params.perform_runmerging ? { "${meta.id}-${meta.db_name}" } : { "${meta.id}-${meta.run_accession}-${meta.db_name}" }
publishDir = [ publishDir = [
path: { "${params.outdir}/centrifuge/${meta.db_name}" }, path: { "${params.outdir}/centrifuge/${meta.db_name}" },
mode: params.publish_dir_mode, mode: params.publish_dir_mode,

1
nextflow.config
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@ -98,7 +98,6 @@ params {
// centrifuge // centrifuge
run_centrifuge = false run_centrifuge = false
centrifuge_kreport = false
centrifuge_save_unaligned = false centrifuge_save_unaligned = false
centrifuge_save_aligned = false centrifuge_save_aligned = false
centrifuge_sam_format = false centrifuge_sam_format = false