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With a join

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This commit is contained in:
James Fellows Yates 2022-11-22 13:27:49 +01:00
parent ebfc84e235
commit e8de006ed6
1 changed files with 1 additions and 1 deletions
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modules/nf-core/krakenuniq/preloadedkrakenuniq/main.nf generated
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@ -87,7 +87,7 @@ process KRAKENUNIQ_PRELOADEDKRAKENUNIQ {
--preload $ram_chunk_size \\ --preload $ram_chunk_size \\
--threads $task.cpus" --threads $task.cpus"
for fastq in ${fastqs.join(' ')}; do \\ for fastq in "${fastqs.join('\" \"')}"; do \\
PREFIX=\$(echo \$fastq) PREFIX=\$(echo \$fastq)
echo "krakenuniq \\ echo "krakenuniq \\
--db $db \\ --db $db \\