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Remove duplicate config and sync longread fastqc
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commit
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2 changed files with 1 additions and 11 deletions
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@ -90,16 +90,6 @@ process {
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]
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}
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withName: FASTQC_POST {
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ext.args = '--quiet'
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ext.prefix = { "${meta.id}_${meta.run_accession}_processed" }
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publishDir = [
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path: { "${params.outdir}/fastqc/processed" },
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mode: 'copy',
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pattern: '*.html'
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]
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}
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withName: CAT_FASTQ {
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publishDir = [
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path: { "${params.outdir}/prepared_sequences" },
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@ -24,7 +24,7 @@ workflow LONGREAD_PREPROCESSING {
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[ meta_new, reads ]
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}
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FASTQC_POST ( PORECHOP.out.reads )
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FASTQC_PROCESSED ( PORECHOP.out.reads )
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ch_versions = ch_versions.mix(PORECHOP.out.versions.first())
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ch_multiqc_files = ch_multiqc_files.mix( FASTQC_PROCESSED.out.zip.collect{it[1]} )
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