From f0f89eb08252a4b06979ac91162e15ea4abaf676 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Fri, 3 Mar 2023 14:58:21 +0100 Subject: [PATCH] Apply suggestions from code review Co-authored-by: Sofia Stamouli <91951607+sofstam@users.noreply.github.com> --- docs/output.md | 2 +- nextflow.config | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/output.md b/docs/output.md index 2c02879..0a2e2d0 100644 --- a/docs/output.md +++ b/docs/output.md @@ -21,7 +21,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d - [Bowtie2](#bowtie2) - Host removal for Illumina reads - [minimap2](#minimap2) - Host removal for Nanopore reads - [SAMtools stats](#samtools-stats) - Statistics from host removal -- [SAMtools bam2fq](#samtools-fastq) - Converts unmapped BAM file to fastq format (minimap2 only) +- [SAMtools bam2fq](#samtools-bam2fq) - Converts unmapped BAM file to fastq format (minimap2 only) - [Bracken](#bracken) - Taxonomic classifier using k-mers and abundance estimations - [Kraken2](#kraken2) - Taxonomic classifier using exact k-mer matches - [KrakenUniq](#krakenuniq) - Taxonomic classifier that combines the k-mer-based classification and the number of unique k-mers found in each species diff --git a/nextflow.config b/nextflow.config index c4567a9..e08a1dc 100644 --- a/nextflow.config +++ b/nextflow.config @@ -305,7 +305,7 @@ manifest { description = """Taxonomic classification and profiling of shotgun metagenomic data""" mainScript = 'main.nf' nextflowVersion = '!>=22.10.1' - version = '1.0.0' + version = '1.0.0' doi = '' }