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Sofia Stamouli 2022-10-31 09:31:13 +01:00 committed by GitHub
parent f87131c7b1
commit f1778acf35
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1 changed files with 2 additions and 3 deletions
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subworkflows/local/longread_hostremoval.nf
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@ -44,9 +44,8 @@ workflow LONGREAD_HOSTREMOVAL {
SAMTOOLS_INDEX ( SAMTOOLS_VIEW.out.bam ) SAMTOOLS_INDEX ( SAMTOOLS_VIEW.out.bam )
ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() ) ch_versions = ch_versions.mix( SAMTOOLS_INDEX.out.versions.first() )
SAMTOOLS_VIEW.out.bam bam_bai = SAMTOOLS_VIEW.out.bam
.join(SAMTOOLS_INDEX.out.bai, by: [0], remainder: true) .join(SAMTOOLS_INDEX.out.bai, remainder: true)
.set { bam_bai }
SAMTOOLS_STATS ( bam_bai, reference ) SAMTOOLS_STATS ( bam_bai, reference )
ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions.first()) ch_versions = ch_versions.mix(SAMTOOLS_STATS.out.versions.first())