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Apply suggestions from code review
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1 changed files with 3 additions and 3 deletions
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@ -26,7 +26,7 @@ workflow LONGREAD_PREPROCESSING {
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}
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ch_versions = ch_versions.mix(PORECHOP.out.versions.first())
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ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log.collect{it[1]}.ifEmpty([]) )
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ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log )
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} else if ( !params.longread_qc_run_clip && params.longread_qc_run_filter ) {
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@ -48,8 +48,8 @@ workflow LONGREAD_PREPROCESSING {
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ch_versions = ch_versions.mix(PORECHOP.out.versions.first())
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ch_versions = ch_versions.mix(FILTLONG.out.versions.first())
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ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log.collect{it[1]}.ifEmpty([]) )
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ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log.collect{it[1]}.ifEmpty([]) )
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ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log )
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ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log )
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}
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FASTQC_PROCESSED ( ch_processed_reads )
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