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James A. Fellows Yates 2022-07-29 09:52:49 +02:00 committed by GitHub
parent 873a13e028
commit f48b22d615
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1 changed files with 3 additions and 3 deletions
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subworkflows/local/longread_preprocessing.nf
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@ -26,7 +26,7 @@ workflow LONGREAD_PREPROCESSING {
}
ch_versions = ch_versions.mix(PORECHOP.out.versions.first())
ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log.collect{it[1]}.ifEmpty([]) )
ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log )
} else if ( !params.longread_qc_run_clip && params.longread_qc_run_filter ) {
@ -48,8 +48,8 @@ workflow LONGREAD_PREPROCESSING {
ch_versions = ch_versions.mix(PORECHOP.out.versions.first())
ch_versions = ch_versions.mix(FILTLONG.out.versions.first())
ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log.collect{it[1]}.ifEmpty([]) )
ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log.collect{it[1]}.ifEmpty([]) )
ch_multiqc_files = ch_multiqc_files.mix( PORECHOP.out.log )
ch_multiqc_files = ch_multiqc_files.mix( FILTLONG.out.log )
}
FASTQC_PROCESSED ( ch_processed_reads )