millironx/taxprofiler
1
0
Fork 0
mirror of https://github.com/MillironX/taxprofiler.git synced 2024-11-24 13:49:54 +00:00
Code Issues Releases Packages Activity

fix: insert id key again

Browse source
This commit is contained in:
Moritz E. Beber 2023-03-09 15:43:58 +01:00
parent 246da8a7b0
commit fa1c779536
1 changed files with 4 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

7
subworkflows/local/input_check.nf
View file

@ -65,9 +65,10 @@ def create_fastq_channel(LinkedHashMap row) {
// Function to get list of [ meta, fasta ] // Function to get list of [ meta, fasta ]
def create_fasta_channel(LinkedHashMap row) { def create_fasta_channel(LinkedHashMap row) {
def meta = row.subMap(['sample', 'run_accession', 'instrument_platform']) def meta = row.subMap(['sample', 'run_accession', 'instrument_platform'])
meta.single_end = true meta.id = meta.sample
meta.is_fasta = true meta.single_end = true
meta.is_fasta = true
if (!file(row.fasta).exists()) { if (!file(row.fasta).exists()) {
exit 1, "ERROR: Please check input samplesheet -> FastA file does not exist!\n${row.fasta}" exit 1, "ERROR: Please check input samplesheet -> FastA file does not exist!\n${row.fasta}"