From feeb8ba8dd89530ac0b0204b71aa6d5cbf24ba5c Mon Sep 17 00:00:00 2001
From: nf-core-bot <core@nf-co.re>
Date: Thu, 24 Mar 2022 11:48:43 +0000
Subject: [PATCH] Template update for nf-core/tools version 2.3.2

---
 .github/PULL_REQUEST_TEMPLATE.md  | 1 -
 .github/workflows/awsfulltest.yml | 2 --
 .github/workflows/awstest.yml     | 2 --
 .gitpod.yml                       | 2 +-
 CHANGELOG.md                      | 2 --
 5 files changed, 1 insertion(+), 8 deletions(-)

diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
index d9886cf..06c0ffe 100644
--- a/.github/PULL_REQUEST_TEMPLATE.md
+++ b/.github/PULL_REQUEST_TEMPLATE.md
@@ -10,7 +10,6 @@ Remember that PRs should be made against the dev branch, unless you're preparing
 
 Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/taxprofiler/tree/master/.github/CONTRIBUTING.md)
 -->
-<!-- markdownlint-disable ul-indent -->
 
 ## PR checklist
 
diff --git a/.github/workflows/awsfulltest.yml b/.github/workflows/awsfulltest.yml
index fe65d56..41f5c11 100644
--- a/.github/workflows/awsfulltest.yml
+++ b/.github/workflows/awsfulltest.yml
@@ -22,8 +22,6 @@ jobs:
           workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
           access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
           compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
-          pipeline: ${{ github.repository }}
-          revision: ${{ github.sha }}
           workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
           parameters: |
             {
diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml
index c791946..ebffec6 100644
--- a/.github/workflows/awstest.yml
+++ b/.github/workflows/awstest.yml
@@ -17,8 +17,6 @@ jobs:
           workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
           access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
           compute_env: ${{ secrets.TOWER_COMPUTE_ENV }}
-          pipeline: ${{ github.repository }}
-          revision: ${{ github.sha }}
           workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/taxprofiler/work-${{ github.sha }}
           parameters: |
             {
diff --git a/.gitpod.yml b/.gitpod.yml
index c452ee9..85d95ec 100644
--- a/.gitpod.yml
+++ b/.gitpod.yml
@@ -4,7 +4,7 @@ vscode:
   extensions: # based on nf-core.nf-core-extensionpack
     - codezombiech.gitignore # Language support for .gitignore files
     # - cssho.vscode-svgviewer                 # SVG viewer
-    - davidanson.vscode-markdownlint # Markdown/CommonMark linting and style checking for Visual Studio Code
+    - esbenp.prettier-vscode # Markdown/CommonMark linting and style checking for Visual Studio Code
     - eamodio.gitlens # Quickly glimpse into whom, why, and when a line or code block was changed
     - EditorConfig.EditorConfig # override user/workspace settings with settings found in .editorconfig files
     - Gruntfuggly.todo-tree # Display TODO and FIXME in a tree view in the activity bar
diff --git a/CHANGELOG.md b/CHANGELOG.md
index bccbb8a..ca0928b 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,8 +11,6 @@ Initial release of nf-core/taxprofiler, created with the [nf-core](https://nf-co
 
 ### `Fixed`
 
-- Clarified conda usage and added an installation tutorial for Singularity since the one on Syllabs' website uses an outdate version of GO Compiler
-
 ### `Dependencies`
 
 ### `Deprecated`