27 commits

Author	SHA1	Message	Date
James Fellows Yates	656956b0f9	Black formatting	2022-12-20 14:08:42 +01:00
James A. Fellows Yates	41063bc670	Apply suggestions from code review ... Co-authored-by: Moritz E. Beber <midnighter@posteo.net>	2022-12-20 13:56:01 +01:00
James Fellows Yates	11db981a88	minor fixes	2022-12-20 13:55:15 +01:00
James Fellows Yates	4b68e95770	Revert PEP validation back to python samplesheet check	2022-12-12 08:49:13 +01:00
James Fellows Yates	43a8aa4405	Remove detect_reads.py and replace remaining checks with nextflow code instead	2022-09-27 15:32:51 +02:00
Rafal Stepien	5f3eee9a4a	Add working version of PEP-nf-core integration	2022-09-14 14:28:48 -04:00
James Fellows Yates	3a33d81e80	Black linting I hope	2022-09-02 11:55:19 +02:00
James Fellows Yates	8fe7f8bf4b	Revert "Fix final linting problems for template merge" ... This reverts commit e64b3f85a4.	2022-09-02 11:47:33 +02:00
James A. Fellows Yates	e64b3f85a4	Fix final linting problems for template merge	2022-09-02 06:07:33 +00:00
James A. Fellows Yates	8fff741f85	Merge branch 'dev' into nf-core-template-merge-2.5.1	2022-09-01 16:26:45 +02:00
nf-core-bot	28045430d1	Template update for nf-core/tools version 2.5.1	2022-09-01 13:34:04 +00:00
James A. Fellows Yates	28d8d3f8fb	Merge branch 'dev' into nf-core-template-merge-2.5	2022-08-31 09:16:34 +02:00
nf-core-bot	6dfca81761	Template update for nf-core/tools version 2.5	2022-08-30 13:43:03 +00:00
James A. Fellows Yates	1821496a49	Merge pull request #90 from nf-core/samplesheet-check-improvement ... Make check_samplesheet.py compatible with nf-core/fetchngs	2022-08-23 15:57:59 +01:00
James A. Fellows Yates	4315141c5f	Update bin/check_samplesheet.py ... Co-authored-by: Moritz E. Beber <midnighter@posteo.net>	2022-08-23 15:44:53 +02:00
James A. Fellows Yates	2e7f26f380	Replace header tuple with sub-set list of only relevant columns for sample checking	2022-06-14 20:09:48 +00:00
James Fellows Yates	c1a7d6335f	Do not require fixed column order	2022-06-13 21:02:12 +02:00
James Fellows Yates	ec13b8d608	Remove support for uncompressed FASTQ files	2022-06-09 08:21:48 +02:00
nf-core-bot	a560492353	Template update for nf-core/tools version 2.4	2022-05-16 10:22:38 +00:00
ljmesi	7f7ddc9f14	Update comment	2022-03-18 10:48:06 +01:00
James A. Fellows Yates	ac77676d2b	Merge branch 'dev' into nf-core-template-merge-2.3	2022-03-17 13:11:34 +01:00
nf-core-bot	699d26b149	Template update for nf-core/tools version 2.3	2022-03-15 21:05:37 +00:00
maxibor	1b893cb039	add check for fastq with fasta	2022-02-18 13:27:10 +01:00
maxibor	a6cfa0a1ba	cleanup	2022-02-18 13:15:30 +01:00
maxibor	54a1a4fd45	update samplesheet specs	2022-02-18 13:11:18 +01:00
maxibor	f867c057a4	add more columns to samplesheet	2022-02-18 11:53:13 +01:00
James Fellows Yates	12e7b428f2	initial template build from nf-core/tools, version 2.2	2022-02-18 07:55:14 +01:00