sofstam
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3ff54e620e
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Add centrifuge classification
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2022-03-24 13:02:25 +01:00 |
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nf-core-bot
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6b939e6728
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Template update for nf-core/tools version 2.3.1
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2022-03-23 13:57:56 +00:00 |
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James Fellows Yates
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81bfb629ca
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Add working basic test to begin
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2022-03-21 20:28:09 +01:00 |
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James Fellows Yates
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8012998542
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Make parameter naming more consistent for clipmerge
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2022-03-21 19:52:50 +01:00 |
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ljmesi
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f6fe26de46
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Rename shortread subworkflow to be more consistent
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2022-03-21 18:25:56 +01:00 |
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ljmesi
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c97de32434
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Make adapter and quality trimming optional
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2022-03-21 18:17:08 +01:00 |
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ljmesi
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582aaa105f
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Include long reads preprocessing subworkflow
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2022-03-18 15:12:07 +01:00 |
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Lauri Mesilaakso
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0936b9b28e
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Update workflows/taxprofiler.nf
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-03-18 14:18:38 +01:00 |
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ljmesi
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c8e49c56f4
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Perform fastqc on nanopore reads before trimming
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2022-03-18 13:47:44 +01:00 |
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James A. Fellows Yates
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ac77676d2b
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Merge branch 'dev' into nf-core-template-merge-2.3
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2022-03-17 13:11:34 +01:00 |
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nf-core-bot
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699d26b149
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Template update for nf-core/tools version 2.3
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2022-03-15 21:05:37 +00:00 |
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James Fellows Yates
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e39c6a8ccb
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Fix MALT multiqc report clash
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2022-03-03 18:04:03 +01:00 |
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James Fellows Yates
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2c183ed2ed
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Add Kraken2 and MALT/run as Proof of Concept (currnetly MQC issue)
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2022-03-03 17:42:02 +01:00 |
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James Fellows Yates
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278f5605ca
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Added database preparation and final channel for profiling
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2022-02-19 12:36:08 +01:00 |
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James Fellows Yates
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cf55cc592c
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Get skeleton read processing to input for profiling
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2022-02-18 16:51:01 +01:00 |
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James Fellows Yates
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12e7b428f2
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initial template build from nf-core/tools, version 2.2
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2022-02-18 07:55:14 +01:00 |
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