millironx/taxprofiler
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Author SHA1 Message Date
James Fellows Yates
2c183ed2ed Add Kraken2 and MALT/run as Proof of Concept (currnetly MQC issue) 2022-03-03 17:42:02 +01:00
James Fellows Yates
278f5605ca Added database preparation and final channel for profiling 2022-02-19 12:36:08 +01:00
James Fellows Yates
cf55cc592c Get skeleton read processing to input for profiling 2022-02-18 16:51:01 +01:00
maxibor
1b893cb039 add check for fastq with fasta 2022-02-18 13:27:10 +01:00
maxibor
a6cfa0a1ba cleanup 2022-02-18 13:15:30 +01:00
maxibor
54a1a4fd45 update samplesheet specs 2022-02-18 13:11:18 +01:00
maxibor
1aba3ed01c Merge remote-tracking branch 'origin/dev' into dev 2022-02-18 11:53:52 +01:00
maxibor
f867c057a4 add more columns to samplesheet 2022-02-18 11:53:13 +01:00
James A. Fellows Yates
c68afbbf90
Update nextflow.config 2022-02-18 08:45:06 +01:00
James Fellows Yates
7321daf4f6 Update README with approximate pipeline outline 2022-02-18 08:41:34 +01:00
James Fellows Yates
12e7b428f2 initial template build from nf-core/tools, version 2.2 2022-02-18 07:55:14 +01:00