14 commits

Author	SHA1	Message	Date
Sofia Stamouli	c23eb968f9	Remove TODOs from test configs	2022-12-16 15:20:06 +01:00
Sofia Stamouli	7e7299203c	Set values to false	2022-12-02 08:55:23 +01:00
sofstam	6d140c683a	Merge branch 'dev' into update_motus	2022-12-01 18:49:23 +01:00
sofstam	38a818fd17	Apply review suggestions	2022-12-01 13:42:21 +01:00
sofstam	e5bb627402	Apply review suggestions	2022-12-01 11:12:31 +01:00
James Fellows Yates	bc98f5b80f	Separate KrakenUniq test run	2022-12-01 10:37:14 +01:00
sofstam	933b820c19	Apply review suggestions	2022-11-29 16:57:07 +01:00
James Fellows Yates	d7fbe55849	Add KU to the test profiles and add id to KU processes	2022-11-29 14:19:01 +01:00
sofstam	49af33f68e	Include NCBI_id, read counts and mgc arguments in motus	2022-11-29 11:07:29 +01:00
Moritz E. Beber	60e369aa5c	fix: set default run bracken to false	2022-10-21 10:47:51 +02:00
James A. Fellows Yates	dd194f3f47	Fix mOTUs CI and old param warn	2022-09-04 15:01:58 +00:00
James Fellows Yates	a0ee82bf43	Add motus/merge and biom support	2022-07-12 11:39:26 +02:00
JIANHONG OU	c8a59adbce	remove the database auto-download for mOTUs.	2022-06-03 14:13:58 -04:00
JIANHONG OU	4d77b47e8d	create a new test profile config for mOTUs.	2022-05-31 08:47:38 -04:00